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Funambol has raised $12.5 million in venture funding to fuel its open-source mobile messaging software business. On top of that, the company is announcing today that it’s landed AOL as a customer for its mobile synchronization software.

Funambol raised its second round from Nexit Ventures (which led), Castile Ventures, Walden International, and HIG Ventures. The new financing brings the total raised by the company to $25 million. The new funds will help the company expand in Europe and Asia.

Fabrizio Capobianco, CEO of the Redwood City, Calif.-based company, said Funambol’s software has been downloaded more than two million times, making it the top open-source mobile software. Mobile phone carriers put the “push email” software on their phones to create a free Blackberry-style functionality. With the software on a phone, users can have their corporate email forwarded to them on the go. That function has previously been the domain of high-end smart phones.

“We make email accessible on the 98 percent of phones that don’t have email capabilities,” Capobianco said.

However, there are plenty of other companies offering similar email capabilities, including Flurry.

He said that the company makes its money through its carrier edition, which can scale to millions of users.

Capobianco said the AOL deal would help AOL synchronize AOL’s online PC and mobile mail services. In addition, AOL recently selected Funambol to help synchronize its online and mobile mail services using Funambol’s open source software and its scalable synchronization platform.

The company’s name comes from the Italian word for tight rope walker. The company has 75 employees and most of its development team is in Italy. With the new funding, Nexit partner Michel Wendell joins Funambol’s board of directors, and Castile general partner Carl Stjernfeldt joins the board as an observer.

TODAY’S HEADLINES:

• Q Thera takes in $15M for neural stem-cell treatments (release)
• Stroke clotbuster Concentric Medical withdraws IPO (IPOhome)
• Avera recaps with $9M to relaunch human tests of GI drug (VentureWire)
• Tissue repairer Nerites raises $5.7M (release)
• Semafore Pharma aims for $7.5M to launch new cancer-drug trials (VentureWire)
• Triage Wireless gets $6.7M for “cuffless” blood-pressure monitors (peHUB)
• MAKO Surgicals prices IPO, falls in first day of trading (WSJ)
• ImmunoCellular acquires assets of Molecular Antibody Technology (release)

Q Thera takes in $15M for neural stem-cell treatments – Q Therapeutics, a Salt Lake City biotech working on neural stem-cell treatments for neurological conditions, has received the first portion of a $15 million second funding round. Investors in the round included vSpring Capital, Invitrogen, Epic Ventures, Toucan Capital, University of Utah Research Foundation, Salt Lake Life Science Angels and Q management.

Q is taking aim at diseases such as multiple sclerosis and cerebral palsy that result when the protective myelin sheath that protects nerve fibers and the spinal cord deteriorates, often for little-understood reasons. The company is developing neural stem cells that can produce new glial cells, which in theory should be able to regenerate the damaged myelin. (Irritatingly enough, the company insists on calling its product “Q cells.”) The company aims to begin clinical trials in transeverse myelitis, a paralyzing form of MS, next year.

Stroke clotbuster Concentric Medical withdraws IPO – Concentric Medical, a Mountain View, Calif., developer of medical devices for removing stroke-causing blood clots, withdrew its proposed IPO. The company becomes the eighth life-science startup to abandon an IPO this year.

Concentric, of course, cited “unfavorable market conditions” as the reason for its withdrawal. The device maker, which is still unprofitable, reported working capital and cash and short-term investments of $20.3 million at the end of June and has been burning cash at a rate of about $7 million a year, so it’s not necessarily in dire straits. Concentric, in fact, today announced it had arranged a $15 million line of credit with Horizon Technology Finance, giving it an additional cushion.

The company makes and sells a catheter-based device that can be snaked through a patient’s blood vessels to the brain in order to physically “grab” and remove stroke-causing blood clots. Although Concentric won approval for the device in 2004, sales have grown more modestly — in part, perhaps, because Concentric hasn’t undertaken the clinical studies necessary to demonstrate the usefulness of its technique compared to other treatments, and has no plans to do so. (The company listed this point as a risk factor in its SEC filings.) What’s more, the Concentric device can sometimes damage blood vessels in the brain; in one of two studies, almost ten percent of patients suffered a cranial hemorrhage.

Our previous coverage of the company is here.

Avera recaps with $9M to relaunch human tests of GI drug – Avera Pharmaceuticals, a San Diego specialty pharma developing drugs against a variety of conditions, recapitalized with a $9 million “first” funding round, VentureWire reports. Such a recap usually amounts to a restart for a company, which in this case was prompted by a halted clinical trial of a drug for irritable bowel syndrome and overactive bladder.

Investors in the recap included all participants in the company’s previous funding round: Aisling Capital, SV Life Sciences, Aberdare Ventures, BioAsia Investments, H.I.G. Ventures, Montreux Equity Partners, Bay City Capital, BTG PLC, Frazier Healthcare Ventures, InterWest Partners, St. Paul Venture Capital and Windamere Venture Partners. The company declined to provide a valuation to VentureWire, but it’s almost certainly suffered a “down round,” or it wouldn’t be recapitalizing.

Avera shut down mid-stage trials of its drug, known as AV608, last year after animal testing turned up potential toxicity issues. The company has since redesigned the drug to eliminate a compound it called a “non-active metabolite,” and hopes to resume studies later this year. Avera had raised more than $72 million prior to the recap.

A stealthy Georgia-based startup with plans to manufacture silicon-based solar cells unveiled itself this morning, announcing a hefty $50 million financing that will help it start production.

The company, called Suniva, says its cells operate at about 18 percent efficiency, near 50 percent better than the average cell produced today. CEO John Baumstark told us that there is a “clear roadmap” to boosting their efficiency over 20 percent within a year or two. Just as importantly, they are designed to be cheap.

The company is a spin-off of Georgia Tech’s Center for Excellence in Photovoltaics, a research group founded in 1992 by the university. The company is a little more than a year old, and has technology licensed from the Center and has its director, Dr. Ajeet Rohatgi, as its chief technical officer.

Using established manufacturing techniques including screen printing, Suniva expects to be producing cells for under $1 per watt within two to three years. If true, that would make Suniva’s cells some of the most cost-effective photovoltaics available.

The new funding is planned to go towards a 25 megawatt per year production facility located near Atlanta, Georgia, the company’s homebase. Baumstark said in an interview that the production line would be highly automated, requiring a total of about 40 staff members for round-the-clock production.

If it meets its initial cost targets, this first factory can be scaled up to higher production, although the company is also considering opening facilities in other states depending on the incentives offered. However, plans have yet to be finalized even for the first factory.

The funding is Suniva’s second, and was co-led by New Enterprise Associates and Advanced Equities. Goldman Sachs participated though Cogentrix Energy, alongside HIG Ventures and Quercus Investments. The company previously took $5.5 million in mid-2007 from NEA, HIG and Quercus.

Alder Biopharmaceuticals, a Bothell, Wash., developer of antibody drugs, raised $40 million in a third funding round. Investors included Delphi Ventures, TPG Biotech, Sevin Rosen Funds, Ventures West, H.I.G. Ventures, and WRF Capital.

Alder develops antibody-based drugs for inflammation and autoimmune disease. The company’s lead candidate, ALD518, is currently in clinical trials as a treatment for rheumatoid arthritis and cancer, although neither Alder’s Web site nor its statement disclose when the drug began human tests.

Alder’s work is also noticeable because it produces its antibodies in genetically modified yeast cells, a new manufacturing technique that the company claims is faster and cheaper than traditional genetic-engineering methods involving mammalian cells. Not only does production in yeast allow companies to sidestep the need for expensive patent licenses that cover traditional methods, Alder claims it can speed the development process to months from years, making it possible to evaluate a much wider range of antibody candidates.

Alder also claims that ALD518 is the first full-length functioning antibody to be made on an industrial scale in yeast. For an additional information on the merits of yeast-based antibody manufacture, see our previous coverage of Adimab, a startup developing its own yeast-production system for similar reasons. If you’re a technical-detail junkie, don’t miss the discussion in comments.

Featured companies: Asteres, HemaQuest Pharmaceuticals, Nanosphere, Novalar Pharmaceuticals, Tranzyme Pharma

(UPDATED: Expanded items for Nanosphere, HemaQuest and Transzyme. Moved Novalar to a separate item here.)

Diagnostic maker Nanosphere prices IPO at low end of range, raises up to $113M — Nanosphere, a Northbrook, Ill., biotech focused on nanotech-derived diagnostics, priced its IPO at $14 a share, at the low end of its estimated range. The company, which could sell as many as eight million shares, stands to raise up to $112.7 million in the offering, which values the company at as much as $309.4 million.

Nanosphere is focused on molecular diagnostics that gauge the likelihood of problems such as blood clots or a patient’s likely response to a particular medication. Our previous coverage of the company is here and here.

HemaQuest draws $20M to fight blood disease — Newton, Mass.-based HemaQuest Pharmaceuticals (no Web site), a biotech focused on new drugs for blood disorders such as sickle-cell anemia, raised $20 million in a first funding round. Investors included De Novo Ventures, Forward Ventures and Lilly Ventures.

The company said the funds will support clinical trials of its first drug candidate, an oral treatment for sickle-cell anemia and beta thalassemia. Both diseases involve disorders of hemoglobin, the oxygen-carrying molecule found in red blood cells. HemaQuest said it intends to submit plans for a human test of its drug candidate, which it didn’t identify, by the end of this year.

Novalar raises $30M for dental-numbness reverser — See the full story here.

Tranzyme Pharma pulls in $20M for GI drugs — Tranzyme Pharma, a Research Triangle Park, N.C., biotech developing new drugs for gastrointestinal and metabolic disorders, raised $20 million in a third funding round. Investors included H.I.G. Ventures, Thomas, McNerney & Partners, Quaker BioVentures, and BDC Venture Capital.

Tranzyme’s lead drug candidate aims to treat severe gastroparesis, a condition in which food stops moving through the stomach, and ileus, a form of obstruction in the bowel. That drug, designated TZP-101, recently began mid-stage human trials in both conditions.

OTHER HEADLINES OF NOTE:

• Self-dispensing drug machine maker Asteres pulls in $8M (VentureWire, sub req’d)

Featured companies: AngioScore, Forsight Labs, Genoptix, Metastatix, Optherion, QLT

UPDATED: See below.

Artery opener AngioScore pulls in $30M — AngioScore, a Fremont, Calif., maker of balloon catheters used to open up clogged arteries, raised $30 million in a fifth funding round. Investors included Telegraph Hill Partners, Psilos Group Management, QuestMark Partners, L.P., UV Partners, California Technology Ventures and Innomed Ventures.

AngioScore’s balloon catheters, which inflate inside blocked blood vessels to restore blood flow, are designed to overcome problems that sometimes occur during traditional angioplasty procedures. Conventional angioplasty can lead to tears and splits in the plaque that lines blocked arteries and can damage arterial walls as well. AngioScore claims its new catheter overcomes this problem by making precise cuts, or “scores,” in the plaque, thereby reducing the chance that it will crack and split unpredictably.

Optherion raises $37M for macular degeneration — New Haven, Conn.-based Optherion, a biotech focused on new treatments for forms of the eye condition macular degeneration, raised $37 million in a first funding round. Investors included Quaker BioVentures, Domain Associates, Johnson & Johnson Development, Purdue Pharmaceutical Products, Pappas Ventures, Biogen Idec New Ventures and GE Healthcare Financial Services.

Optherion is developing drugs that affect the “alternative complement pathway,” an arm of the immune system that may be implicated in two forms of macular degeneration, an eye condition that can lead to partial blindness, and possibly other autoimmune disorders as well. The company was founded in 2005 following discoveries that linked the alternative-complement system to macular degeneration.

Metastatix draws $35M for low-side-effect drugs — Atlanta’s Metastatix, a biotech working on drugs for AIDS, cancer and inflammatory disease, raised $35 million in a second financing round. Investors included Frazier Healthcare, H.I.G. Ventures, the Aurora Funds, CM Capital, SR One, MedImmune Ventures, Georgia Venture Partners, Centrosome Ventures and the State of Georgia.

Metastatix is developing drugs that block a cellular receptor called CXCR4, which is best known as one of the two ways HIV can enter and infect cells. CXCR4 may also be involved in cancer and inflammation. Metastatix says it is particularly focused on drug candidates with the “fewest possible side effects.”

Optical-device incubator Forsight Labs sells unnamed “newco” to QLT for $42M+ — Forsight Labs, an incubator for optical-device companies backed by Morgenthaler Ventures, Split Rock Partners and Versant Ventures, agreed to sell its second, unnamed startup to QLT for $42 million plus milestone payments that could be worth $25 million or more. The startup, known only as ForSight NewCo II, has developed a new type of ocular drug-delivery system that could potentially be used to treat a variety of conditions including glaucoma. The release describing the deal is here.

Diagnostic-services company Genoptix sets IPO terms, aims for $92M — The Carlsbad, Calif., provider of cancer and blood-disease diagnostic services, said it plans to sell up to 5.75 million shares at a price of $14 to $16 apiece, for a maximum possible take of $92 million. The company’s SEC filing is here. We covered the company in some detail at the time of its IPO filing here.

UPDATE: Added items on Metastatix and Optherion.

Featured companies: AirInSpace, Anacor Pharmaceuticals, Apollo Endosurgery, Ascension Health Partners, BG Medicine, CeraPedics, GlaxoSmithKline, Simplex Diabetic Supply, Zars Pharma

UPDATED: Last entry added at 2am PT on 10/8/07.

Anacor Pharma pulls in $22M from Glaxo, with hundreds of millions more on the line –Palo Alto, Calif.-based Anacor Pharmaceuticals, a biotech developing new anti-infective and anti-inflammatory drugs using boron chemistry, struck a wide-ranging partnership with GlaxoSmithKline worth up to $605 million. Anacor will receive a $12 million cash payment and a $10 million equity investment in exchange for Glaxo options to as many as eight drug candidates.

Anacor is also eligible for milestone payments on each product candidate, although the release is so badly worded it’s difficult to know exactly how much is really on the line. What the release says is that “Anacor is eligible to receive discovery, development, regulatory and commercial milestones ranging up to $252 million and $331 million for each product candidate.” Does that mean a total of $583 million for each candidate, somewhere between $252 million and $331 million, or something else altogether? You’ve got me. I’ve put in calls to both companies, and will update if someone clarifies this.

(UPDATE: A GSK representative finally called back, admitted that the original wording was unclear, and said that any given product candidate could yield maximum potential milestones of between $252 million and $331 million. Whew.)

Anacor is developing a new class of antibiotics, antifungal drugs and anti-inflammatories based on the novel properties of boron, an element that doesn’t feature largely in traditional pharmaceuticals. Its leading candidates target a fungal infection called onychomycosis and the autoimmune skin condition psoriasis. The company filed for a $58 million IPO in August; see our coverage here.

Simplex Diabetic Supply draws $50M for acquisitions — Brentwood, Tenn.-based Simplex Diabetic Supply (no Web site), a provider of diabetic testing supplies, raised $50 million for expansion. New Enterprise Associates provided the funding. Simplex Chairman Richard Pinson said the funding will allow the company to “accelerate and execute” its acquisition strategy. (UPDATE: See a longer take on this deal and what it says about the business strategies of nervous VCs here.)

Ascension Health Ventures launches $200M healthcare fund — Ascension Health Ventures, a St. Louis-based venture firm owned by the Catholic non-profit healthcare provider Ascension Health, launched a new $200 million fund. Ascension Health and two other Catholic health systems — Catholic Health Initiatives and Catholic Health East — provided the funding. The fund will target later-stage medical device, healthcare technology and healthcare service companies. The release is here.

Bone-graft substitutor CeraPedics pulls in $14M — The Lakewood, Colo., maker of a drug-infused putty that stimulates bone regrowth, raised $14.5 million of a $16.5 million first funding round, PE Hub reports, citing a regulatory filing. Orbimed Advisors led the round. CeraPedics makes a bone-graft substitute that relies on a peptide called P-15 that plays an important role initiating the formation of bone.

Apollo Endosurgery raises $11.5M for minimally invasive surgical devices — The Austin, Tex., developer of surgical devices designed for operations that utilize the body’s “natural orifices” raised $11.5 million in a first funding round. Among those providing the funding were PTV Sciences, H.I.G. Ventures, and individual investors. Apollo’s devices are specifically designed for surgeries that utilize the digestive tract in order to access the peritoneal cavity — a technique now being applied to obesity and early-stage cancers.

AirInSpace draws €6M for biodecontamination devices — Paris-based AirInSpace, a developer of devices that identify and neutralize airborne biological hazards, raised €6 million ($8.5 million) in a second funding round. Investors included Matignon Technologies and Oddo AM. AirInSpace makes devices that reduce airborne microbial pathogens, although I’ve read their release and Web site through a few times and I still don’t have a clue exactly how they’re supposed to do that.

AssayDepot gets $1.8M for drug-research service marketplace — San Diego’s AssayDepot, an Internet marketplace for the drug-research services industry, raised $1.8 million in a first funding round. Private investors provided the funding. The company is developing a marketplace intended to allow industry and academic researchers to contract for research services offered around the world.

Zars Pharma abandons IPO — Salt Lake City’s Zars Pharma, which reformulates pain drugs for delivery via skin patches, formally withdrew its proposed IPO, citing “market conditions.” Its SEC filing is here. The last we heard from the company was in late September, when Zars reportedly postponed an IPO that had been scheduled for that week. (See our previous coverage here, here and here.)

The Zars withdrawal doesn’t seem to herald any particular trend in the IPO market, which is still blowing hot and cold on biotech and pharma companies. For instance, MAP Pharmaceuticals, another specialty pharma that went public last Friday, has seen a nice share-price rise of more than 30% since its offering. Two more tests of the biotech IPO market are expected this week: BioHeart (which I covered here) and Targanta Therapeutics (our coverage here and here).

Diagnostics maker BG Medicine sets IPO range, aims for €50M — BG Medicine, a Waltham, Mass., maker of molecular diagnostics for heart disease and measuring drug response, now hopes to raise as much as €50 million ($70.8 million) in an IPO. BG Medicine plans to sell as many as 6.9 million shares at a price of €5.75 to €7.25 apiece. We last wrote about the company here.

(UPDATED at 7:10pm PT: See below.)

Featured companies: NeurAxon, VytronUS, Avila Therapeutics, CardioNet, Ventana Medical Systems, CytoLogix, PlaCor

NeurAxon raises $32M for pain drugs — You have to hand it to Waltham, Mass.-based NeurAxon — the company certainly knows how to keep itself in the news. Today, it announced it has raised $32 million in a second funding round, a week after it reported a positive early-stage trial result for its experimental migraine treatment.

Investors included Delphi Ventures, OrbiMed Advisors, BDC Venture Capital, Genesys Capital Partners, H.I.G. Ventures, NeuroVentures Fund, Ventures West Capital and Lawrence Bloch, NeurAxon’s CEO.

Stealthy VytronUS gets $6.6M — Los Altos, Calif.-based VytronUS, a secretive medical-device company, raised $6.6 million in a first funding round, PE Hub reports, citing a regulatory filing. Delphi Ventures and New Enterprise Associates provided the funds.

Avila Therapeutics receives undisclosed first funding — Avila Therapeutics, a Waltham, Mass., biotech focused on cancer and viral disease, raised an undisclosed first funding round in February, VentureWire reports (subscription required). Investors included Abingworth Management, Advent Venture Partners, Atlas Venture and Polaris Venture Partners. The company doesn’t have a Web site.

Wireless heart monitor CardioNet files to raise $150M in an IPO — CardioNet, a San Diego medical-device firm focused on wireless heartbeat monitors, filed to raise up to $150 million in an IPO. The company still isn’t profitable, although its sales appear to be set to double this year.

The In Vivo blog has some additional insight into CardioNet’s rather convoluted funding history.

Defunct device maker wins patent case against Ventana — CytoLogix, a failed medical-device startup formerly based in Cambridge, Mass., won a patent-infringement suit against publicly traded Ventana Medical Systems of Tuscon, Ariz. A jury awarded CytoLogix $10.8 million in damages, but said Ventana wasn’t liable for related antitrust claims. CytoLogix attorneys have said they will seek to have the damages paid to the company’s shareholders, VentureWire reports.

From VentureWire:

CytoLogix alleged in the patent litigation that Ventana learned about CytoLogix’s proprietary intellectual property by gaining access to a confidential business plan that CytoLogix had distributed in the mid-1990s as part of its search for venture capital. This allegation stemmed from an admission made by Ventana’s then-Chairman Jack Schuler, as part of an address he made in October 1999, at a U.S. Trust investment conference in Tarrytown, N.Y.

In the speech, Schuler described in detail how years before, Ventana had made use of information in the business plan. A 2002 Barron’s article about the litigation quotes him in the speech as having acknowledged the competition in a major way.

CytoLogix sold its business operations to Dako in 2002, and currently exists only to pursue the litigation. Ventana, meanwhile, is trying to fend off an unsolicited takeover offer from Roche.

The original Barron’s article on the lawsuit is here, and there’s a little more detail on the decision in this AP story.

PlaCor names new CEO — PlaCor, a Plymouth, Minn., developer of blood-cell diagnostics, named John Reinke as CEO, effective Sept. 4. PlaCor is developing diagnostic tests of platelet reactivity intended to determine patient response to anticoagulant treatment following serious blood-clot incidents, which can lead to heart attacks or strokes. Current CEO Bill Haworth will become the company’s chief scientific officer.

UPDATE (7:10pm PT): Added items on Ventana/CytoLogix lawsuit and PlaCor.